Index

_

__init__() (yotse.execution.CustomExecutor method) (yotse.execution.Executor method) (yotse.optimization.blackbox_algorithms.BayesOpt method) (yotse.optimization.blackbox_algorithms.GAOpt method) (yotse.optimization.fitting.FuncFit method) (yotse.optimization.generic_optimization.GenericOptimization method) (yotse.optimization.modded_pygad_ga.ModGA method) (yotse.optimization.optimizer.Optimizer method) (yotse.optimization.whitebox_algorithms.SciPyOpt method) (yotse.pre.ConstraintDict method) (yotse.pre.Experiment method) (yotse.pre.OptimizationInfo method) (yotse.pre.Parameter method) (yotse.pre.ParameterDependencyDict method) (yotse.pre.SystemSetup method) (yotse.utils.prediction.Predict method)

_has_no_output_arg() (in module examples.run_examples) _is_executed (yotse.optimization.optimizer.Optimizer attribute) _objective_func() (yotse.optimization.blackbox_algorithms.GAOpt method) _run_example() (in module examples.run_examples)

A

ackley_function_2d() (in module examples.wobbly_function.example_wobbly_main) (in module examples.wobbly_function.example_wobbly_whitebox) (in module examples.wobbly_function.wobbly_function)

add_noise() (yotse.optimization.fitting.FuncFit static method) add_optimization_info() (yotse.pre.Experiment method) add_parameter() (yotse.pre.Experiment method) aux_dir (yotse.execution.Executor attribute)

B

BayesOpt (class in yotse.optimization.blackbox_algorithms)

blackbox_optimization (yotse.execution.Executor attribute)

C

chi_square() (yotse.optimization.fitting.FuncFit static method) clear() (yotse.pre.ConstraintDict method) (yotse.pre.ParameterDependencyDict method) cmdline_dict_to_list() (yotse.pre.SystemSetup method) collect_data() (yotse.execution.CustomExecutor method) (yotse.execution.Executor method) ConstraintDict (class in yotse.pre) constraints (yotse.optimization.blackbox_algorithms.GAOpt attribute) construct_points() (yotse.optimization.optimizer.Optimizer method) copy() (yotse.pre.ConstraintDict method) (yotse.pre.ParameterDependencyDict method)

cost_function (yotse.pre.Experiment property) create_datapoint_c_product() (yotse.pre.Experiment method) create_points_around_suggestion() (yotse.optimization.blackbox_algorithms.BayesOpt method) create_points_based_on_optimization() (yotse.execution.CustomExecutor method) (yotse.execution.Executor method) create_separate_files_for_job() (in module yotse.utils.blueprint_tools) current_datapoints (yotse.optimization.blackbox_algorithms.BayesOpt property) (yotse.optimization.blackbox_algorithms.GAOpt property) (yotse.optimization.generic_optimization.GenericOptimization property) (yotse.optimization.whitebox_algorithms.SciPyOpt property) current_step_directory (yotse.pre.SystemSetup property) CustomExecutor (class in yotse.execution)

D

data_points (yotse.pre.Experiment attribute) (yotse.pre.Parameter attribute)

E

err() (yotse.optimization.fitting.FuncFit static method) examples module examples.blueprint_example.src module examples.run_examples module examples.wobbly_function module examples.wobbly_function.analyse_function_output module examples.wobbly_function.example_wobbly_bayesian module examples.wobbly_function.example_wobbly_main module

examples.wobbly_function.example_wobbly_resume module examples.wobbly_function.example_wobbly_whitebox module examples.wobbly_function.wobbly_function module execute() (yotse.optimization.blackbox_algorithms.BayesOpt method) (yotse.optimization.blackbox_algorithms.GAOpt method) (yotse.optimization.generic_optimization.GenericOptimization method) (yotse.optimization.whitebox_algorithms.SciPyOpt method) Executor (class in yotse.execution) Experiment (class in yotse.pre) experiment (yotse.execution.Executor attribute)

F

file_list_to_single_df() (in module yotse.utils.utils) find_poly_fit() (yotse.optimization.fitting.FuncFit method) fromkeys() (yotse.pre.ConstraintDict method) (yotse.pre.ParameterDependencyDict method)

FuncFit (class in yotse.optimization.fitting) function (yotse.pre.ParameterDependencyDict attribute) function() (in module examples.wobbly_function.wobbly_function)

G

GAOpt (class in yotse.optimization.blackbox_algorithms) generate_data_points() (yotse.pre.Parameter method) generate_initial_data_points() (yotse.pre.Parameter method) generate_optimizer() (yotse.execution.CustomExecutor method) (yotse.execution.Executor method) generate_slurm_script() (yotse.pre.Experiment method) GenericOptimization (class in yotse.optimization.generic_optimization) get() (yotse.pre.ConstraintDict method) (yotse.pre.ParameterDependencyDict method) get_active_optimization() (yotse.execution.CustomExecutor method) (yotse.execution.Executor method) get_best_solution() (yotse.optimization.blackbox_algorithms.BayesOpt method) (yotse.optimization.blackbox_algorithms.GAOpt method) (yotse.optimization.generic_optimization.GenericOptimization method) (yotse.optimization.whitebox_algorithms.SciPyOpt method)

get_files_by_extension() (in module yotse.utils.utils) get_function() (yotse.optimization.blackbox_algorithms.BayesOpt method) (yotse.optimization.blackbox_algorithms.GAOpt method) (yotse.optimization.generic_optimization.GenericOptimization method) (yotse.optimization.whitebox_algorithms.SciPyOpt method) get_new_points() (yotse.optimization.blackbox_algorithms.BayesOpt method) (yotse.optimization.blackbox_algorithms.GAOpt method) (yotse.optimization.generic_optimization.GenericOptimization method) (yotse.optimization.whitebox_algorithms.SciPyOpt method) grid_based_point_creation() (yotse.optimization.optimizer.Optimizer method)

H

high (yotse.pre.ConstraintDict attribute)

I

input_param_cost_df (yotse.optimization.whitebox_algorithms.SciPyOpt attribute) input_params_to_cost_value() (yotse.optimization.blackbox_algorithms.BayesOpt method) (yotse.optimization.blackbox_algorithms.GAOpt method) (yotse.optimization.generic_optimization.GenericOptimization method) (yotse.optimization.whitebox_algorithms.SciPyOpt method)

is_active (yotse.pre.Parameter property) items() (yotse.pre.ConstraintDict method) (yotse.pre.ParameterDependencyDict method)

K

keys() (yotse.pre.ConstraintDict method) (yotse.pre.ParameterDependencyDict method)

L

learn() (yotse.utils.prediction.Predict method), [1] list_to_numpy_array() (in module yotse.utils.utils)

load_executor_state() (yotse.execution.CustomExecutor method) (yotse.execution.Executor method) low (yotse.pre.ConstraintDict attribute)

M

main() (in module examples.wobbly_function.example_wobbly_bayesian) (in module examples.wobbly_function.example_wobbly_main) (in module examples.wobbly_function.example_wobbly_resume) (in module examples.wobbly_function.example_wobbly_whitebox) max_iterations (yotse.optimization.blackbox_algorithms.BayesOpt property) (yotse.optimization.blackbox_algorithms.GAOpt property) (yotse.optimization.generic_optimization.GenericOptimization property) (yotse.optimization.whitebox_algorithms.SciPyOpt property) MAXIMUM (yotse.optimization.blackbox_algorithms.BayesOpt attribute) (yotse.optimization.blackbox_algorithms.GAOpt attribute) (yotse.optimization.generic_optimization.GenericOptimization attribute) (yotse.optimization.whitebox_algorithms.SciPyOpt attribute) MINIMUM (yotse.optimization.blackbox_algorithms.BayesOpt attribute) (yotse.optimization.blackbox_algorithms.GAOpt attribute) (yotse.optimization.generic_optimization.GenericOptimization attribute) (yotse.optimization.whitebox_algorithms.SciPyOpt attribute) model (yotse.utils.prediction.Predict attribute) ModGA (class in yotse.optimization.modded_pygad_ga) module examples examples.blueprint_example.src examples.run_examples examples.wobbly_function examples.wobbly_function.analyse_function_output examples.wobbly_function.example_wobbly_bayesian examples.wobbly_function.example_wobbly_main examples.wobbly_function.example_wobbly_resume examples.wobbly_function.example_wobbly_whitebox examples.wobbly_function.wobbly_function yotse yotse.execution yotse.optimization yotse.optimization.blackbox_algorithms yotse.optimization.fitting yotse.optimization.generic_optimization yotse.optimization.modded_pygad_ga yotse.optimization.optimizer yotse.optimization.whitebox_algorithms yotse.post yotse.pre yotse.utils yotse.utils.blueprint_tools yotse.utils.prediction yotse.utils.utils

N

name (yotse.pre.ParameterDependencyDict attribute) ndarray_to_list() (in module yotse.utils.utils)

next_optimization() (yotse.execution.CustomExecutor method) (yotse.execution.Executor method)

O

optimization_algorithm (yotse.optimization.optimizer.Optimizer attribute) OptimizationInfo (class in yotse.pre) optimize() (yotse.optimization.optimizer.Optimizer method) Optimizer (class in yotse.optimization.optimizer)

optimizer (yotse.execution.Executor attribute) overwrite_internal_data_points() (yotse.optimization.blackbox_algorithms.BayesOpt method) (yotse.optimization.blackbox_algorithms.GAOpt method) (yotse.optimization.generic_optimization.GenericOptimization method) (yotse.optimization.whitebox_algorithms.SciPyOpt method)

P

Parameter (class in yotse.pre) ParameterDependencyDict (class in yotse.pre) parse_slurm_arg() (yotse.pre.Experiment method) plot_cost_function() (in module yotse.post) plot_opt_steps() (in module yotse.post) pop() (yotse.pre.ConstraintDict method) (yotse.pre.ParameterDependencyDict method)

popitem() (yotse.pre.ConstraintDict method) (yotse.pre.ParameterDependencyDict method) pre_submission_analysis() (yotse.execution.CustomExecutor method) (yotse.execution.Executor method) pre_submission_setup_per_job() (yotse.execution.CustomExecutor method) (yotse.execution.Executor method) Predict (class in yotse.utils.prediction) predict() (yotse.utils.prediction.Predict method), [1]

Q

qcgpilot_commandline() (yotse.pre.Experiment method)

R

remove_files_after_run() (in module examples.wobbly_function.example_wobbly_main) replace_include_param_file() (in module yotse.utils.blueprint_tools) represent_scalar_node() (in module yotse.utils.blueprint_tools) run() (yotse.execution.CustomExecutor method) (yotse.execution.Executor method) (yotse.optimization.modded_pygad_ga.ModGA method), [1]

run_blueprint_example() (in module examples.run_examples) run_examples() (in module examples.run_examples) run_single_generation() (yotse.optimization.modded_pygad_ga.ModGA method), [1]

S

save_executor_state() (yotse.execution.CustomExecutor method) (yotse.execution.Executor method) scipy_callback() (in module examples.wobbly_function.example_wobbly_main) SciPyOpt (class in yotse.optimization.whitebox_algorithms) set_basic_directory_structure_for_job() (in module yotse.pre) setdefault() (yotse.pre.ConstraintDict method) (yotse.pre.ParameterDependencyDict method)

setup_optimization_dir() (in module yotse.utils.blueprint_tools) step (yotse.pre.ConstraintDict attribute) submit() (yotse.execution.CustomExecutor method) (yotse.execution.Executor method) suggest_best_solution() (yotse.optimization.optimizer.Optimizer method) SystemSetup (class in yotse.pre)

U

update() (yotse.pre.ConstraintDict method) (yotse.pre.ParameterDependencyDict method) update_blackbox_cost_data() (yotse.optimization.optimizer.Optimizer method) update_internal_cost_data() (yotse.optimization.blackbox_algorithms.BayesOpt method) (yotse.optimization.blackbox_algorithms.GAOpt method) (yotse.optimization.generic_optimization.GenericOptimization method) (yotse.optimization.whitebox_algorithms.SciPyOpt method)

update_parameter_through_dependency() (yotse.pre.Parameter method) update_yaml_params() (in module yotse.utils.blueprint_tools)

V

values() (yotse.pre.ConstraintDict method) (yotse.pre.ParameterDependencyDict method)

W

whitebox_submit() (yotse.execution.CustomExecutor method) (yotse.execution.Executor method)

wobbly_pre() (in module examples.wobbly_function.example_wobbly_main)

Y

yotse module yotse.execution module yotse.optimization module yotse.optimization.blackbox_algorithms module yotse.optimization.fitting module yotse.optimization.generic_optimization module yotse.optimization.modded_pygad_ga module yotse.optimization.optimizer module

yotse.optimization.whitebox_algorithms module yotse.post module yotse.pre module yotse.utils module yotse.utils.blueprint_tools module yotse.utils.prediction module yotse.utils.utils module